MikeOK,
Yes I would try richening the needle a clip or two to get rid of the stumble. If one clip position has no effect then try two (clip down, needle up to richen, of course). If things still don’t improve I would put the clip back where it was and go one richer on the pilot jet and start over. If you change the pilot you should probably also go back to 1-3/4 turns out on idle mix and reevaluate.
If the stumble you are describing happens only when the throttle is severely whacked open you may be able to cure it by lengthening the stroke of the accelerator pump. If the stumble happens during quick throttle openings to less than half throttle then this will probably have no effect. A benefit of this adjustment is it is very easy and feedback is very noticeable. Just make sure you remember the stock position so you can return to the base setting if things get out of hand.
True, in the
manual it very clearly says not to adjust this screw (it also says there is no need to adjust idle mix

) but I have had some success with this on my 426 with no ill affects. I had cured myself and my bike of the “YZ stumble” (by rejetting) but I noticed while trying some low speed wheelies that the stumble was still there when I quickly rolled the throttle beyond a half turn. It wasn’t noticeable during “ordinary” riding, but I never do moto.
All you need to remove to get at the adjuster is the small allen bolt on the black plastic piece that covers the slide pulley and throttle cables on the right side of the carb. Remove this fastener and pull the plastic away and you will see a small screw under the pulley. The end of the screw butts against a plastic cam. By tightening or turning the screw clockwise the cam is pushed further back. This increases the starting point and thus increases the stroke of the accelerator pump.
Try turning this screw a half turn counterclockwise. You should be able to easily stall the motor now with a quick twist. Go back to the stock setting and then try a quarter turn clockwise. The affects of a quarter turn either way should be very noticeable. I ended up one quarter turn in over stock.
So at that point where my YZ would cough is where, I assume, the pump had completed its stroke. By lengthening this my YZ is now still getting extra fuel where it wasn’t before. So now I can be below idle and really whack it open and it doesn’t stumble. I almost looped it trying to make it cough. Okay I did loop it, but I caught it before I trashed my fender. I can now no longer create any stumble on my YZ no matter how hard I try.
Make sure your bike is fully warmed up and your idle is set properly before trying this. I imagine this screw exists to realign the pump stroke after slide height is set (set screw on top of slide). Also, keep in mind that all this works in concert with jetting. I may indeed be simply covering up a crappy jetting job by playing with the pump, but I don’t think so. If you think you are jetted lean then fix that first.
A side issue is that the pump on the FCR tends to collect grunge. Frequent washings or water crossings may also corrode the pump push rod. I have experienced the grunge effect, YZ stumble was so bad the bike would die because pump wasn’t working properly. I now have a fuel filter on my bike. The corrosion thing I don’t know about because nothing corrodes in New Mexico, I think I read that in Dirt Bike…
There are also a few companies that make replacement pump housings. I think the lastest Dirt Rider has a small test on one made by Factory R&D. In the article it was noted that the ’01 YZ pump delivered less fuel but over a longer stroke, so maybe we should all try to swap the ’01 PN (when they get here).
Someone on WR side also tried another brand a while back called the P-38 I think. I’d love to hear about it if anybody else has tried one of these things (they were both about $80). Another curious thing is that there are like four different pump diaphragms offered from Yamaha. I have asked everyone I know to ask and nobody knew the difference between the different PNs. I bet some displace more or less fuel than standard. So I’d love to hear if anyone has tried changing that also. Because with two aftermarket pump housings and a change to the pump for ’01 I am convinced that the cure for infamous “YZ Stumble” lies in part with the acceleraor pump.
Sorry for the long post…
Hope this helps!