I bought a 2006 E that I rejetted just a few months ago. I didn't buy a jet kit. While a jet kit does include a custom needle, it also only has std Keihin jets. IMO, what you gain from the custom needle is not worth the extra $60 or so.
You must rejet if you do any intake or exhaust mods or the bike will run terrible. You should rejet, even if you don't.
For people to help you, you need to let us know what your setup and riding conditions (temp, elev above sea level) will be. If your setup or condtions are different than what I have below, respond to this thread, and we'll help you out with any changes you may need to make.
Suggested setup for up to 3000', stock exhaust, and 3x3 (snokel removed) is as follows:
155 main (up from 142 stock)
45 pilot (stock)
5th clip OBDXP or OBDYP needle (OBDXP or OBDYP 4th clip is stock)
*Optional 3rd clip OBEMN or 4th clip OBEPN for even better performance
2 turns out on fuel screw (1.25 stock)
Sudco, which has a minimum order, will make you spend money for parts you don't need. Therefore, I suggest you order from a Yamaha dealer. Part numbers are as follows:
4MX-14943-38-00 155 main
5NL-14916-PN-00 EPN needle
The jet will be about $6 and the optional needle about $14.
I would also get and install an adj fuel screw while you have the carb out. It will make it much easier to fine tune the pilot circuit. It can be had here and you want the $20 model:
http://www.kientech....dFuelScrews.htm